Nextflow Modules
Showing module(s) with keyword "str"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/expansionhunterdenovo/merge | Process | expansionhunterdenovo merge str | Merge STR profiles into a multi-sample STR profile |
| nf-core/hipstr | Process | str tandem repeats short tandem repeats genotyping bam cram vcf | Genotype and phase short tandem repeats using Illumina whole-genome sequencing data |
| nf-core/strdrop/build | Process | str vcf lrs | Build reference json from sequencing coverage in STR VCFs |
| nf-core/strdrop/call | Process | str vcf lrs | Detect drops in STR coverage |
| nf-core/trtools/dumpstr | Process | tandem repeats str vcf filtering trtools | DumpSTR filters VCF files with TR genotypes, performing call-level and locus-level filtering, and outputs a filtered VCF file. |
| nf-core/trtools/mergestr | Process | tandem repeats str vcf merge trtools | MergeSTR merges multiple VCF files produced by the same TR genotyper into a single VCF file. |