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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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4 pipeline(s) matching "chromatin".

Pipeline Keywords Description
nf-core/atacseq
2.1.2
atac-seq chromatin-accessibiity ATAC-seq peak-calling and QC analysis pipeline
nf-core/chipseq
2.1.0
chip chip-seq chromatin-immunoprecipitation macs2 +1 ChIP-seq peak-calling, QC and differential analysis pipeline.
nf-core/sammyseq
0.0.0-023aff4
3d-genome chromatin dna epigenetics +6 Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.
nf-core/tfactivity
0.0.0-5ed1431
open-chromatin-regions transcription-factors transcriptomics Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.