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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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13 pipeline(s) matching "dna".

Pipeline Keywords Description
nf-core/ampliseq
3.0.0
 16s 18s amplicon-sequencing edna +12 Amplicon sequencing analysis workflow using DADA2 and QIIME2
nf-core/circdna
1.1.0
 ampliconarchitect ampliconsuite circle-seq circular +5 Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.
nf-core/coproid
2.0.1
 adna ancient-dna coprolite microbiome Coprolite host Identification pipeline
nf-core/deepvariant
1.0.0
 deep-variant dna google variant-calling Please consider using/contributing to https://github.com/nf-core/sarek
nf-core/detaxizer
1.3.0
 de-identification decontamination edna fastq +10 A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
nf-core/eager
2.5.3
 adna ancient-dna-analysis ancientdna genome +3 A fully reproducible and state-of-the-art ancient DNA analysis pipeline
nf-core/hlatyping
2.2.0
 dna hla hla-typing immunology +3 Precision HLA typing from next-generation sequencing data
nf-core/methylong
2.0.0
 dna-methylation fiber-seq long-read ont +1 Extract methylation calls from long reads (ONT/ PacBio)
nf-core/methylseq
4.2.0
 bisulfite-sequencing dna-methylation em-seq epigenome +6 Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair
nf-core/oncoanalyser
3.0.0
 cancer clinical ctdna dna +9 A comprehensive cancer DNA/RNA analysis and reporting pipeline
nf-core/rnadnavar
1.0.0
 n/a Pipeline for RNA and DNA integrated analysis for somatic mutation detection
nf-core/sammyseq
0.0.0-023aff4
 3d-genome chromatin dna epigenetics +6 Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.
nf-core/ssds
0.0.0-0cc3ee6
 chip-ssds dmc1-ssds dsbs ori-ssds +4 Single-stranded DNA Sequencing (SSDS) nf-core pipeline
Nextflow Registry v0.28.0_c73a300 - 12 Oct 2026 09:32:30 (UTC)