Nextflow Registry | Nextflow Pipelines

Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

6 pipeline(s) matching "expression".

Pipeline	Keywords	Description
nf-core/alleleexpression 0.0.0-985ad30	n/a	Alleleexpression is a nf-core pipeline for allele-specific expression (ASE) analysis using STAR-WASP for alignment, UMI-tools for deduplication, and phaser for haplotype phasing and ASE detection.
nf-core/cageseq 1.0.2	cage cage-seq cageseq-data gene-expression +1	CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.
nf-core/differentialabundance 2.0.0	atac-seq chip-seq deseq2 differential-abundance +6	Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
nf-core/lncpipe 0.0.0-ac1ab61	differential-expression lncrna long-non-coding non-coding +3	UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
nf-core/slamseq 1.0.0	differential-expression quantseq slamseq transcriptomics	SLAMSeq processing and analysis pipeline
nf-core/stableexpression 1.1.0	expression housekeeping-genes qpcr-analysis	This pipeline is designed to identify the most stable genes in one or more expression datasets (RNA-seq / Microarray). The ideal use case is for determining the most suitable RT-qPCR reference genes for a given species.