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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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2 pipeline(s) matching "gatk4".

Pipeline Keywords Description
nf-core/rnavar
1.3.0
gatk4 rna rnaseq variant-calling +1 gatk4 RNA variant calling pipeline
nf-core/sarek
3.10.0
annotation cancer gatk4 genomics +7 Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing