Nextflow Registry | Nextflow Pipelines

Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

6 pipeline(s) matching "annotation".

Pipeline	Keywords	Description
nf-core/genomeannotator 0.0.0-1af305a	annotation assembly draft-genome gene-annotation +2	Pipeline for the identification of (coding) gene structures in draft genomes.
nf-core/mag 5.5.0	annotation assembly binning long-read-sequencing +4	Assembly and binning of metagenomes
nf-core/proteinannotator 1.1.0	annotation proteomics	Generation of sequence-level annotations for amino acid sequences
nf-core/raredisease 3.1.2	diagnostics rare-disease snv structural-variants +4	Call and score variants from WGS/WES of rare disease patients.
nf-core/sarek 3.10.0	annotation cancer gatk4 genomics +7	Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
nf-core/tumourevo 1.0.0	cancer-evolution cancer-genomics copy-number-variation mutational-signatures +4	Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)