Nextflow Registry | Nextflow Pipelines

Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

3 pipeline(s) matching "cancer".

Pipeline	Keywords	Description
nf-core/oncoanalyser 3.0.0	cancer clinical ctdna dna +9	A comprehensive cancer DNA/RNA analysis and reporting pipeline
nf-core/sarek 3.10.0	annotation cancer gatk4 genomics +7	Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
nf-core/tumourevo 1.0.0	cancer-evolution cancer-genomics copy-number-variation mutational-signatures +4	Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)