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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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5 pipeline(s) matching "map".

Pipeline Keywords Description
nf-core/bactmap
1.0.0
bacteria bacterial bacterial-genome-analysis genomics +3 A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
nf-core/dualrnaseq
1.0.0
dualrna-seq host-pathogen quantification readmapping +1 Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
nf-core/magmap
1.3.0
n/a Best-practice analysis pipeline for mapping reads to a (large) collections of genomes
nf-core/mnaseseq
1.0.0
mnase-seq nucleosome nucleosome-maps nucleosome-positioning MNase-seq analysis pipeline using BWA and DANPOS2.
nf-core/rnastructurome
1.0.0
dms map rna-structure rnacentral +3 a bioinformatics pipeline for analysing chemical high-throughput RNA structure-probing data