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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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3 pipeline(s) matching "bacteria".

Pipeline Keywords Description
nf-core/bacass
2.6.1
assembly bacterial-genomes denovo denovo-assembly +4 Simple bacterial assembly and annotation pipeline
nf-core/bacmodel
0.0.0-c6948d4
bacteria genome-scale-models metabolic-models metaomics Systems-based bacterial functional modeling pipeline
nf-core/bactmap
1.0.0
bacteria bacterial bacterial-genome-analysis genomics +3 A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences