Nextflow Registry | Nextflow Pipelines

Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

4 pipeline(s) matching "mass-spec".

Pipeline	Keywords	Description
nf-core/metaboigniter 2.0.1	identification mass-spectrometry metabolomics ms1 +2	Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
nf-core/mhcquant 3.3.0	dda immunopeptidomics mass-spectrometry mhc +2	Identify and quantify MHC eluted peptides from mass spectrometry raw data
nf-core/mspepid 0.0.0-980218a	mass-spectrometry proteomics	This pipeline performs the peptide identification of MS2 spectra from a proteomics experiment. For this, different search algorithm and rescoring approaches can be selected.
nf-core/quantms 1.2.0	dia lfq mass-spec mass-spectrometry +4	Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.