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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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4 pipeline(s) matching "openms".

Pipeline Keywords Description
nf-core/diaproteomics
1.2.4
data-independent-proteomics dia-proteomics openms proteomics Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
nf-core/mhcquant
3.3.0
dda immunopeptidomics mass-spectrometry mhc +2 Identify and quantify MHC eluted peptides from mass spectrometry raw data
nf-core/proteomicslfq
1.0.0
label-free-quantification openms proteomics Proteomics label-free quantification (LFQ) analysis pipeline
nf-core/quantms
1.2.0
dia lfq mass-spec mass-spectrometry +4 Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.