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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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4 pipeline(s) matching "shotgun".

Pipeline Keywords Description
nf-core/ddamsproteomics
0.0.0-e1f270b
proteomics shotgun-ms Quantitative shotgun MS proteomics
nf-core/deepmutscan
0.0.0-56e2861
community-workflow deep-mutational-scanning genotype-phenotype shotgun-sequencing nf-core/deepmutscan is a reproducible, scalable, and community-curated pipeline for analyzing deep mutational scanning (DMS) data using shotgun DNA sequencing.
nf-core/detaxizer
1.3.0
de-identification decontamination edna fastq +10 A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
nf-core/taxprofiler
2.0.1
classification illumina long-reads metagenomics +7 Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data