Nextflow Registry | Nextflow Pipelines

Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

7 pipeline(s) matching "genome-assembly".

Pipeline	Keywords	Description
nf-core/bacass 2.6.1	assembly bacterial-genomes denovo denovo-assembly +4	Simple bacterial assembly and annotation pipeline
nf-core/denovohybrid 0.0.0-9299621	assembly denovo denovo-assembly genome-assembly +4	UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
nf-core/genomeannotator 0.0.0-1af305a	annotation assembly draft-genome gene-annotation +2	Pipeline for the identification of (coding) gene structures in draft genomes.
nf-core/genomeassembler 2.0.0	genome-assembly	Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads
nf-core/genomeqc 1.0.1	genome-assembly-evaluation genomics phylogenetic-trees quality-control	Compare the quality of multiple genomes, along with their annotations.
nf-core/neutronstar 1.0.0	10x-genomics 10xgenomics denovo-assembly genome-assembly +2	De novo assembly pipeline for 10X linked-reads using Supernova
nf-core/vipr 0.0.0-6eef3b3	genome-assembly metagenomics variant-calling viral +5	Assembly and intrahost / low-frequency variant calling for viral samples