nf-core/bio2zarr/vcfpartition @ 0.0.0-22e46af
Summary
Outputs a set of region strings that partition indexed VCF/BCF files for parallel processing.
Get started
Add the following snippet to your workflow script to include this module.
include { BIO2ZARR_VCFPARTITION } from 'nf-core/bio2zarr/vcfpartition'
License
MIT License
Process
Name
|
BIO2ZARR_VCFPARTITION |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
vcf
file
|
Indexed VCF/BCF file to partition *.{vcf,vcf.gz,bcf,bcf.gz}
|
index
file
|
Index for the VCF/BCF file *.{tbi,csi}
|
Output
2 channels
#1
partitions
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.tsv
file
|
The output tab-delimited region strings and the file path *.{tsv}
|
#2
versions_vcfpartition
tuple
${task.process}
string
|
The name of the process |
|---|---|
vcfpartition
string
|
The name of the tool |
vcfpartition --version | sed 's/.* //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bio2zarr | Convert bioinformatics data to Zarr | https://sgkit-dev.github.io/bio2zarr/ |
| Version | 0.0.0-22e46af |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 15 Apr 2026 15:00:36 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbio2zarr%2Fvcfpartition/0.0.0-22e46af/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bio2zarr/vcfpartition/blobs/sha256:6c51133ba2b2f24a550de1c7ebc0d89d469f9a53c03b9de068615dcda308af1a |
| Size | 2.7 KB |
| Checksum | sha256:6c51133ba2b2f24a550de1c7ebc0d89d469f9a53c03b9de068615dcda308af1a |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:06:02 (UTC) | 3 | 2.7 KB | |
| 0.0.0-7f68141 | 16 Apr 2026 15:01:31 (UTC) | 3 | 2.7 KB | |
| 0.0.0-22e46af | 15 Apr 2026 15:00:36 (UTC) | 2 | 2.7 KB |