nf-core/bwameth/index @ 0.0.0-0c7146d
Summary
Performs indexing of c2t converted reference genome
Get started
Add the following snippet to your workflow script to include this module.
include { BWAMETH_INDEX } from 'nf-core/bwameth/index'
License
MIT License
Process
Name
|
BWAMETH_INDEX |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Input genome fasta file |
use_mem2
boolean
|
If true, use bwameth index-mem2 for indexing. If false, use bwameth index (default: false) |
|---|
Output
2 channels
#1
index
tuple
meta
directory
|
Directory containing bwameth genome index index
|
|---|---|
BwamethIndex
directory
|
Directory containing bwameth genome index index
|
#2
versions_bwameth_index
tuple
${task.process}
string
|
The name of the process |
|---|---|
bwameth
string
|
The name of the tool |
bwameth.py --version | cut -f2 -d' '
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bwameth | Fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome. | https://github.com/brentp/bwa-meth |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:50:05 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbwameth%2Findex/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bwameth/index/blobs/sha256:cfd05587bfa3f4140dd0fd58dbe315c26b628fc902e306fdaab2d6bc8de3ab44 |
| Size | 2.4 KB |
| Checksum | sha256:cfd05587bfa3f4140dd0fd58dbe315c26b628fc902e306fdaab2d6bc8de3ab44 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:08:18 (UTC) | 5 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:05:03 (UTC) | 4 | 2.5 KB | |
| 0.0.0-7f68141 | 16 Apr 2026 15:00:36 (UTC) | 3 | 2.4 KB | |
| 0.0.0-22e46af | 15 Apr 2026 15:00:26 (UTC) | 4 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:50:05 (UTC) | 3 | 2.4 KB |