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Showing module(s) with keyword "methylseq"

Module Kind Keywords Description
nf-core/bam_methyldackel Workflow 3-letter genome methylation 5mC methylseq bisulphite bisulfite bam Performs methylation quantification based on negative readout of C to T conversion of 3-letter genome alignments using Methyldackel.
nf-core/bismark/align Process bismark 3-letter genome map methylation 5mC methylseq bisulphite bisulfite bam Performs alignment of BS-Seq reads using bismark
nf-core/bismark/coverage2cytosine Process bismark consensus map methylation 5mC methylseq bisulphite bisulfite bam bedGraph Relates methylation calls back to genomic cytosine contexts.
nf-core/bismark/deduplicate Process bismark 3-letter genome map methylation 5mC methylseq bisulphite bisulfite bam Removes alignments to the same position in the genome from the Bismark mapping output.
nf-core/bismark/genomepreparation Process bismark 3-letter genome index methylation 5mC methylseq bisulphite bisulfite fasta Converts a specified reference genome into two different bisulfite converted versions and indexes them for alignments.
nf-core/bismark/methylationextractor Process bismark consensus map methylation 5mC methylseq bisulphite bisulfite bam bedGraph Extracts methylation information for individual cytosines from alignments.
nf-core/bismark/report Process bismark qc methylation 5mC methylseq bisulphite bisulfite report Collects bismark alignment reports
nf-core/bismark/summary Process bismark qc methylation 5mC methylseq bisulphite bisulfite report summary Uses Bismark report files of several samples in a run folder to generate a graphical summary HTML report.
nf-core/bwameth/align Process bwameth alignment 3-letter genome map methylation 5mC methylseq bisulphite bisulfite fastq bam Performs alignment of BS-Seq reads using bwameth
nf-core/bwameth/index Process bwameth 3-letter genome index methylseq bisulphite bisulfite fasta Performs indexing of c2t converted reference genome
nf-core/fastq_align_dedup_bismark Workflow bismark 3-letter genome map methylation 5mC methylseq bisulphite bisulfite bam Align BS-Seq reads to a reference genome using bismark, deduplicate and sort
nf-core/fastq_align_dedup_bwamem Workflow bwamem alignment