Nextflow Modules
Showing module(s) with keyword "bwameth"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bwameth/align | Process | bwameth alignment 3-letter genome map methylation 5mC methylseq bisulphite bisulfite fastq bam | Performs alignment of BS-Seq reads using bwameth |
| nf-core/bwameth/index | Process | bwameth 3-letter genome index methylseq bisulphite bisulfite fasta | Performs indexing of c2t converted reference genome |
| nf-core/fasta_index_bismark_bwameth | Workflow | bismark bwameth prepare genome index | Generate index files from reference fasta for bismark and bwameth |
| nf-core/fasta_index_methylseq | Workflow | bismark bwameth bwamem prepare genome index | Generate index files from reference fasta for bismark, bwameth and bwamem aligners |
| nf-core/fastq_align_dedup_bwameth | Workflow | bwameth alignment 3-letter genome map methylation 5mC methylseq bisulphite bisulfite fastq bam | Performs alignment of BS-Seq reads using bwameth or parabricks/fq2bammeth, sort and deduplicate |
| nf-core/parabricks/fq2bammeth | Process | align sort bqsr duplicates bwameth | NVIDIA Clara Parabricks GPU-accelerated fast, accurate algorithm for mapping methylated DNA sequence reads to a reference genome, performing local alignment, and producing alignment for different parts of the query sequence |