nf-core/concoct/concoctcoveragetable @ 0.0.0-0c7146d
Summary
Generate the input coverage table for CONCOCT using a BEDFile
Get started
Add the following snippet to your workflow script to include this module.
include { CONCOCT_CONCOCTCOVERAGETABLE } from 'nf-core/concoct/concoctcoveragetable'
License
MIT License
Process
Name
|
CONCOCT_CONCOCTCOVERAGETABLE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
BED file describing where each contig was cut up (typically output from CONCOCT's cut_up_fasta.py) *.bed
|
bamfiles
file
|
A single or list of BAM files of reads mapped back to original contigs (prior cutting up) *.bam
|
baifiles
file
|
A single or list of BAM index files (.bai) corresponding to BAM *.bam
|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
Contig coverage table *.tsv
|
#2
versions_concoct
tuple
${task.process}
string
|
The name of the process |
|---|---|
concoct
string
|
The name of the tool |
concoct --version | cut -d " " -f2
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| concoct | Clustering cONtigs with COverage and ComposiTion | https://concoct.readthedocs.io/en/latest/index.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:53:41 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fconcoct%2Fconcoctcoveragetable/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/concoct/concoctcoveragetable/blobs/sha256:e13e32912cba7b59b1610a97865165566c767974ef3a76ad77a929f798203f61 |
| Size | 2.6 KB |
| Checksum | sha256:e13e32912cba7b59b1610a97865165566c767974ef3a76ad77a929f798203f61 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:04 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:07:34 (UTC) | 2 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:53:41 (UTC) | 4 | 2.6 KB |