Nextflow Modules
Showing module(s) with keyword "fragment"
| Module | Keywords | Description |
|---|---|---|
| nf-core/concoct/concoct | contigs fragment mags binning concoct kmer nucleotide composition metagenomics bins | Unsupervised binning of metagenomic contigs by using nucleotide composition - kmer frequencies - and coverage data for multiple samples |
| nf-core/concoct/concoctcoveragetable | contigs fragment mags binning bed bam subcontigs coverage | Generate the input coverage table for CONCOCT using a BEDFile |
| nf-core/concoct/cutupfasta | contigs fragment mags binning fasta cut cut up | Cut up fasta file in non-overlapping or overlapping parts of equal length. |
| nf-core/concoct/extractfastabins | contigs fragment mags binning fasta cut cut up bins merge | Creates a FASTA file for each new cluster assigned by CONCOCT |
| nf-core/concoct/mergecutupclustering | contigs fragment mags binning fasta cut cut up merge | Merge consecutive parts of the original contigs original cut up by cut_up_fasta.py |