nf-core/concoct/cutupfasta @ 0.0.0-3fc6d40
Summary
Cut up fasta file in non-overlapping or overlapping parts of equal length.
Get started
Add the following snippet to your workflow script to include this module.
include { CONCOCT_CUTUPFASTA } from 'nf-core/concoct/cutupfasta'
License
MIT License
Name
|
CONCOCT_CUTUPFASTA |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
(Uncompressed) FASTA file containing contigs *.{fasta,fna,fa,fas}
|
bed
boolean
|
Specify whether to generate a BED file describing where each contig was cut up |
|---|
bed
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bed
file
|
Optional BED File containing locations on original contigs where they were cut up. *.bed
|
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fasta
file
|
Cut up fasta file in non-overlapping or overlapping parts of equal length. *.fasta
|
versions_concoct
tuple
${task.process}
string
|
The name of the process |
|---|---|
concoct
string
|
The name of the tool |
concoct --version | cut -d " " -f2
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| concoct | Clustering cONtigs with COverage and ComposiTion | https://concoct.readthedocs.io/en/latest/index.html |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:07:35 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fconcoct%2Fcutupfasta/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/concoct/cutupfasta/blobs/sha256:1d6e02840a12c9dc1dc8aa0f67950a580672e94c9c0e77bb7af24c4663ff4a85 |
| Size | 2.6 KB |
| Checksum | sha256:1d6e02840a12c9dc1dc8aa0f67950a580672e94c9c0e77bb7af24c4663ff4a85 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:06 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:07:35 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:53:43 (UTC) | 3 | 2.5 KB |