nf-core/concoct/mergecutupclustering @ 0.0.0-6c4ed3a
Summary
Merge consecutive parts of the original contigs original cut up by cut_up_fasta.py
Get started
Add the following snippet to your workflow script to include this module.
include { CONCOCT_MERGECUTUPCLUSTERING } from 'nf-core/concoct/mergecutupclustering'
License
MIT License
Process
Name
|
CONCOCT_MERGECUTUPCLUSTERING |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
clustering_csv
file
|
Input cutup clustering result. Typically *_gt1000.csv from concoct *.csv
|
Output
2 channels
#1
csv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.csv
file
|
Cluster assignments per contig part with consensus cluster *.csv
|
#2
versions_concoct
tuple
${task.process}
string
|
The name of the process |
|---|---|
concoct
string
|
The name of the tool |
concoct --version | cut -d " " -f2
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| concoct | Clustering cONtigs with COverage and ComposiTion | https://concoct.readthedocs.io/en/latest/index.html |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:11:09 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fconcoct%2Fmergecutupclustering/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/concoct/mergecutupclustering/blobs/sha256:37c66039812984814942b0d9145700b4b15ce0fe2d454f1c194d6397384643a7 |
| Size | 2.7 KB |
| Checksum | sha256:37c66039812984814942b0d9145700b4b15ce0fe2d454f1c194d6397384643a7 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:11:09 (UTC) | 4 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:07:38 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:53:46 (UTC) | 1 | 2.7 KB |