nf-core/eklipse @ 0.0.0-0c7146d
Summary
tool for detection and quantification of large mtDNA rearrangements.
Get started
Add the following snippet to your workflow script to include this module.
include { EKLIPSE } from 'nf-core/eklipse'
License
MIT License
Process
Name
|
EKLIPSE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
MT BAM/SAM file *.{bam,sam}
|
bai
file
|
MT BAM/SAM index file *.{bai,sai}
|
ref_gb
file
|
mtDNA reference genome in Genbank format, optional if empty NC_012920.1.gb will be used *.{gb}
|
|---|
Output
4 channels
#1
genes
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*genes.csv
file
|
csv file with gene information *genes.csv
|
#2
circos
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.png
file
|
png file with circos plot of mt *.{png}
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#4
deletions
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*deletions.csv
file
|
csv file with deletion information *deletions.csv
|
| Tool | Description | Homepage |
|---|---|---|
| eklipse | tool for detection and quantification of large mtDNA rearrangements. | https://github.com/dooguypapua/eKLIPse/tree/master |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:58:19 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Feklipse/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/eklipse/blobs/sha256:03a0ea00445f119916f477fd4095bd0d439dc9c0c7cc944bc78cb9f4d0ce9f27 |
| Size | 2.5 KB |
| Checksum | sha256:03a0ea00445f119916f477fd4095bd0d439dc9c0c7cc944bc78cb9f4d0ce9f27 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:14:42 (UTC) | 4 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:42 (UTC) | 4 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:58:19 (UTC) | 4 | 2.5 KB |