Nextflow Registry | nf-core/ganon/classify@0.0.0-6c4ed3a

nf-core/ganon/classify @ 0.0.0-6c4ed3a

Classify FASTQ files against ganon database

Latest version: 0.0.0-6c4ed3a

Total downloads: 10

Source: nf-core/modules

Authors: @jfy133

Maintainers: @jfy133

Classify FASTQ files against ganon database

Add the following snippet to your workflow script to include this module.

include { GANON_CLASSIFY } from 'nf-core/ganon/classify'

MIT License

Process

`Name`	`GANON_CLASSIFY`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fastqs` file	Single or paired FASTQ files, optionally gzipped `*.{fq,fq.gz,fastq,fastq.gz}`

`db` file	Ganon database files from build or build-custom `*.{ibf,tax}`

Output 7 channels

#1 all tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.all` file	Information of all matches to a given read `*.all`

#2 log tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.log` file	Text file containing console output from ganon classify `*.log`

#3 one tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.one` file	Information about a single (best) match of a given read after EM or LCA algorithms `*.one`

#4 tre tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.tre` file	Full ganon report file `*.tre`

#5 unc tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.unc` file	List of all reads without a hit `*.unc`

#6 report tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.rep` file	Plain ganon report file with only targets with match `*.rep`

#7 versions_ganon tuple

`${task.process}` string	The name of the process
`ganon` string	The name of the tool
`ganon --version 2>1 \| sed 's/.*ganon //g'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
ganon	ganon classifies short DNA sequences against large sets of genomic reference sequences efficiently	https://github.com/pirovc/ganon

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:18:05 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fganon%2Fclassify/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ganon/classify/blobs/sha256:d3b72a854a3ae4df38223ed50cee1df2efde22c493590f271570dbd2b414f12f
Size	3.3 KB
Checksum	sha256:d3b72a854a3ae4df38223ed50cee1df2efde22c493590f271570dbd2b414f12f