|
nf-core/catpack/prepare
|
Process
|
catpack
cat
prepare
database
profiling
build
|
Creates a CAT_pack database based on input FASTAs
|
|
nf-core/ganon/buildcustom
|
Process
|
ganon
metagenomics
profiling
taxonomy
k-mer
database
|
Build ganon database using custom reference sequences.
|
|
nf-core/ganon/classify
|
Process
|
ganon
metagenomics
profiling
taxonomy
k-mer
classification
classify
|
Classify FASTQ files against ganon database
|
|
nf-core/ganon/report
|
Process
|
ganon
metagenomics
profiling
taxonomy
k-mer
classification
report
|
Generate a ganon report file from the output of ganon classify
|
|
nf-core/ganon/table
|
Process
|
ganon
metagenomics
profiling
taxonomy
k-mer
classification
report
table
|
Generate a multi-sample report file from the output of ganon report runs
|
|
nf-core/humann3/humann
|
Process
|
function
metagenomics
metatranscriptomics
profiling
community
|
Functional analysis of metagenome or metatranscriptome data
|
|
nf-core/humann3/regroup
|
Process
|
function
metagenomics
metatranscriptomics
profiling
community
|
Regrouping genes to other functional categories
|
|
nf-core/humann3/renorm
|
Process
|
function
metagenomics
metatranscriptomics
profiling
community
|
Normalizing RPKs to relative abundance
|
|
nf-core/singlem/dbdownload
|
Process
|
metagenomics
database
download
profiling
singlem
metapackage
|
Download the SingleM metapackage database used for metagenome profiling
|