Nextflow Modules
Showing module(s) with keyword "profiling"
| Module | Keywords | Description |
|---|---|---|
| nf-core/catpack/prepare | catpack cat prepare database profiling build | Creates a CAT_pack database based on input FASTAs |
| nf-core/ganon/buildcustom | ganon metagenomics profiling taxonomy k-mer database | Build ganon database using custom reference sequences. |
| nf-core/ganon/classify | ganon metagenomics profiling taxonomy k-mer classification classify | Classify FASTQ files against ganon database |
| nf-core/ganon/report | ganon metagenomics profiling taxonomy k-mer classification report | Generate a ganon report file from the output of ganon classify |
| nf-core/ganon/table | ganon metagenomics profiling taxonomy k-mer classification report table | Generate a multi-sample report file from the output of ganon report runs |
| nf-core/singlem/dbdownload | metagenomics database download profiling singlem metapackage | Download the SingleM metapackage database used for metagenome profiling |