nf-core/gem2/gem2bedmappability @ 0.0.0-0c7146d
Summary
Convert a mappability file to bedgraph format
Get started
Add the following snippet to your workflow script to include this module.
include { GEM2_GEM2BEDMAPPABILITY } from 'nf-core/gem2/gem2bedmappability'
License
MIT License
Process
Name
|
GEM2_GEM2BEDMAPPABILITY |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
map
file
|
The mappability file created from the index *.mappability
|
#2
tuple
meta2
map
|
Groovy Map containing index information |
|---|---|
index
file
|
The index of the reference FASTA *.gem
|
Output
3 channels
#1
sizes
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sizes
file
|
The chromosome sizes *.sizes
|
#2
bedgraph
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bg
file
|
The resulting bedgraph file *.bg
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| gem2 | GEM2 is a high-performance mapping tool. It also provide a unique tool to evaluate mappability. | https://paoloribeca.science/gem |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:05:18 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgem2%2Fgem2bedmappability/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gem2/gem2bedmappability/blobs/sha256:f5589246e108c8e43127a99a558a6ef2b2b135f43a309bc5851ace42a8679d43 |
| Size | 2.5 KB |
| Checksum | sha256:f5589246e108c8e43127a99a558a6ef2b2b135f43a309bc5851ace42a8679d43 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:20:53 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:13:37 (UTC) | 4 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:05:18 (UTC) | 3 | 2.5 KB |