Nextflow Modules
Showing module(s) with keyword "bedgraph"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bedgraph_bedclip_bedgraphtobigwig | Workflow | bedgraph bigwig clip conversion | Convert bedgraph to bigwig with clip |
| nf-core/deeptools/bamcompare | Process | bam bigwig bedgraph normalization comparison | Compares two BAM files based on the number of mapped reads and generates a bigWig or bedGraph file with the log2 ratio, ratio, difference or other operations. |
| nf-core/gem2/gem2bedmappability | Process | mappability bedgraph index gem | Convert a mappability file to bedgraph format |
| nf-core/genmap/map | Process | mappability index fasta bedgraph csv wig | create mappability files for a genome |
| nf-core/plastid/makewiggle | Process | genomics riboseq psite wiggle bedgraph | Create wiggle or bedGraph files from alignment files after applying a read mapping rule (e.g. to map ribosome-protected footprints at their P-sites), for visualization in a genome browser |
| nf-core/pretextgraph | Process | pretext bedgraph hic contact maps graph | Converts bedgraph formatted data and embeds it as a graph track inside a Pretext contact map |
| nf-core/seacr/callpeak | Process | peak-caller peaks bedgraph cut&tag cut&run chromatin seacr | Call peaks using SEACR on sequenced reads in bedgraph format |
| nf-core/ucsc/bedgraphtobigwig | Process | bedgraph bigwig ucsc bedgraphtobigwig converter | Convert a bedGraph file to bigWig format. |