Nextflow Modules
Showing module(s) with keyword "bedgraph"
| Module | Keywords | Description |
|---|---|---|
| nf-core/gem2/gem2bedmappability | mappability bedgraph index gem | Convert a mappability file to bedgraph format |
| nf-core/genmap/map | mappability index fasta bedgraph csv wig | create mappability files for a genome |
| nf-core/plastid/make_wiggle | genomics riboseq psite wiggle bedgraph | Create wiggle or bedGraph files from alignment files after applying a read mapping rule (e.g. to map ribosome-protected footprints at their P-sites), for visualization in a genome browser |
| nf-core/seacr/callpeak | peak-caller peaks bedgraph cut&tag cut&run chromatin seacr | Call peaks using SEACR on sequenced reads in bedgraph format |
| nf-core/ucsc/bedgraphtobigwig | bedgraph bigwig ucsc bedgraphtobigwig converter | Convert a bedGraph file to bigWig format. |