nf-core/geofetch @ 0.0.0-0c7146d
Summary
geofetch is a command-line tool that downloads and organizes data and metadata from GEO and SRA
Get started
Add the following snippet to your workflow script to include this module.
include { GEOFETCH } from 'nf-core/geofetch'
License
MIT License
Process
Name
|
GEOFETCH |
|---|
Input
1 channel
geo_accession
string
|
GEO accession ID |
|---|
Output
2 channels
#1
samples
tuple
${geo_accession}
file
|
List of sample files fetched ${geo_accession}/*.CEL.gz
|
|---|---|
${geo_accession}/*.CEL.gz
file
|
List of sample files fetched ${geo_accession}/*.CEL.gz
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| geofetch | Downloads data and metadata from GEO and SRA and creates standard PEPs. | http://geofetch.databio.org/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:05:53 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgeofetch/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/geofetch/blobs/sha256:da75303687c2f9a066c45831a5f4f8ba010a427fb8325b14c48f1e1175a52212 |
| Size | 2.5 KB |
| Checksum | sha256:da75303687c2f9a066c45831a5f4f8ba010a427fb8325b14c48f1e1175a52212 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:21:16 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:13:49 (UTC) | 4 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:05:53 (UTC) | 4 | 2.5 KB |