Nextflow Modules
Showing module(s) with keyword "expression"
| Module | Keywords | Description |
|---|---|---|
| nf-core/affy/justrma | affy microarray expression matrix | Read CEL files into an ExpressionSet and generate a matrix |
| nf-core/deseq2/differential | differential expression rna-seq deseq2 | runs a differential expression analysis with DESeq2 |
| nf-core/geofetch | GEO expression microarray sequencing | geofetch is a command-line tool that downloads and organizes data and metadata from GEO and SRA |
| nf-core/geoquery/getgeo | geo expression microarray | Retrieves GEO data from the Gene Expression Omnibus (GEO) |
| nf-core/limma/differential | differential expression microarray limma | runs a differential expression analysis with Limma |
| nf-core/propr/propd | differential proportionality logratio expression propr propd | Perform differential proportionality analysis |
| nf-core/rsem/calculateexpression | rsem expression quantification | Calculate expression with RSEM |
| nf-core/sentieon/rsemcalculateexpression | rsem expression quantification sentieon | Calculate expression with RSEM |
| nf-core/shinyngs/app | differential expression rna-seq deseq2 | build and deploy Shiny apps for interactively mining differential abundance data |
| nf-core/shinyngs/validatefomcomponents | expression features observations validation | validate consistency of feature and sample annotations with matrices and contrasts |