nf-core/hmmer/hmmalign @ 0.0.0-0c7146d
Summary
hmmalign from the HMMER suite aligns a number of sequences to an HMM profile
Get started
Add the following snippet to your workflow script to include this module.
include { HMMER_HMMALIGN } from 'nf-core/hmmer/hmmalign'
License
MIT License
Process
Name
|
HMMER_HMMALIGN |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
Amino acid or nucleotide gzipped compressed fasta file *.{fna.gz,faa.gz,fasta.gz,fa.gz}
|
hmm
file
|
A gzipped HMM file *.hmm.gz
|
|---|
Output
2 channels
#1
sto
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sto.gz
file
|
Multiple alignment in gzipped Stockholm format *.sto.gz
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| hmmer | Biosequence analysis using profile hidden Markov models | http://hmmer.org/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:09:38 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhmmer%2Fhmmalign/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/hmmer/hmmalign/blobs/sha256:ddaa646939238d752e47c516f1fd2c17a94adbfd0b812d3c81510f069f5d8ab3 |
| Size | 2.4 KB |
| Checksum | sha256:ddaa646939238d752e47c516f1fd2c17a94adbfd0b812d3c81510f069f5d8ab3 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:24:17 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:09:38 (UTC) | 2 | 2.4 KB |