nf-core/hmmer/hmmrank @ 0.0.0-0c7146d
Summary
R script that scores output from multiple runs of hmmer/hmmsearch
Get started
Add the following snippet to your workflow script to include this module.
include { HMMER_HMMRANK } from 'nf-core/hmmer/hmmrank'
License
MIT License
Process
Name
|
HMMER_HMMRANK |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
tblouts
file
|
table outputs from hmmsearch *.tsv.gz
|
Output
2 channels
#1
hmmrank
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.hmmrank.tsv.gz
file
|
TSV file with ranked hmmer results *.hmmrank.tsv.gz
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| hmmer | Biosequence analysis using profile hidden Markov models | http://hmmer.org/ |
| R | A Language and Environment for Statistical Computing | https://www.r-project.org/ |
| Tidyverse | Tidyverse: R packages for data science | https://www.tidyverse.org/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:09:46 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhmmer%2Fhmmrank/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/hmmer/hmmrank/blobs/sha256:9b5f584266b8f292f246ec8833bb2db60a2647a9286422bb25a56ef96950f8bb |
| Size | 3.2 KB |
| Checksum | sha256:9b5f584266b8f292f246ec8833bb2db60a2647a9286422bb25a56ef96950f8bb |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:24:24 (UTC) | 3 | 3.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:16:33 (UTC) | 1 | 3.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:09:46 (UTC) | 3 | 3.2 KB |