Nextflow Modules
Showing module(s) with keyword "rank"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/fasta_hmmsearch_rank_fastas | Workflow | hmmer search rank fasta | Run hmmsearch and output separate fasta files for top scoring hits to each profile |
| nf-core/hmmer/hmmrank | Process | hmmer hmmsearch rank duckdb | Ranks hmmer/hmmsearch hits by score/e-value and, optionally, attaches per-hit domain coordinates -- reading the already-parsed, already-typed Parquet table(s) hmmer/formattsv + duckdb/table2parquet produce, rather than parsing raw hmmsearch tblout/domtblout text itself. The ranking and domain-coordinate merge run as DuckDB SQL (window functions, disk-spillable temp tables) instead of in-memory R/dplyr, so memory use no longer scales with the full width of every input row held at once. |