Nextflow Registry | nf-core/humid@0.0.0-3fc6d40

nf-core/humid @ 0.0.0-3fc6d40

HUMID is a tool to quickly and easily remove duplicate reads from FastQ files, with or without UMIs.

umi fastq deduplication hamming-distance clustering

Latest version: 0.0.0-6c4ed3a

Total downloads: 10

Source: nf-core/modules

Authors: @Joon-Klaps

Maintainers: @Joon-Klaps

HUMID is a tool to quickly and easily remove duplicate reads from FastQ files, with or without UMIs.

Add the following snippet to your workflow script to include this module.

include { HUMID } from 'nf-core/humid'

MIT License

Process

`Name`	`HUMID`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`reads` file	Fastq file(s) to deduplicate `*.{fastq,fq,fastq.gz,fq.gz}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`umi_file` file	UMI file

Output 5 channels

#1 log tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`${prefix}.log` file	Log file of humid, containing progress and errors `*.log`

#2 dedup tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`_dedup.fastq.gz` file	Deduplicated Fastq file(s) `*.{fastq,fq,fastq.gz,fq.gz}`

#3 stats tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`${prefix}` directory	Directory containing statistics file, use for multiqc. `${prefix}/`

#4 versions

`versions.yml` file	File containing software versions `versions.yml`

#5 annotated tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`_annotated.fastq.gz` file	Annotated Fastq file(s) `*.{fastq,fq,fastq.gz,fq.gz}`

Tool	Description	Homepage
humid	HUMID -- High-performance UMI Deduplicator	https://github.com/jfjlaros/HUMID

Version	0.0.0-3fc6d40
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	22 Apr 2026 15:16:43 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fhumid/0.0.0-3fc6d40/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/humid/blobs/sha256:8ff09c544a67206eefed7ef5422afe6dac44e5faa790e335aed2a11f8c5cd842
Size	3.4 KB
Checksum	sha256:8ff09c544a67206eefed7ef5422afe6dac44e5faa790e335aed2a11f8c5cd842
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:24:44 (UTC)	4	3.4 KB
0.0.0-3fc6d40	22 Apr 2026 15:16:43 (UTC)	3	3.4 KB
0.0.0-0c7146d	08 Apr 2026 19:10:14 (UTC)	3	3.4 KB