nf-core/khmer/trimlowabund @ 0.0.0-6c4ed3a
Summary
Removes low abundance k-mers from FASTA/FASTQ files
Get started
Add the following snippet to your workflow script to include this module.
include { KHMER_TRIMLOWABUND } from 'nf-core/khmer/trimlowabund'
License
MIT License
Process
Name
|
KHMER_TRIMLOWABUND |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
seq_file
file
|
fasta/fastq file *.{fa,fasta,fas,fq,fastq}
|
Output
2 channels
#1
trimmed
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${output_path}
file
|
fasta/fastq file with low abundance k-mers removed. *.{fa,fasta,fas,fq,fastq}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| khmer | khmer k-mer counting library | https://github.com/dib-lab/khmer |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:26:50 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fkhmer%2Ftrimlowabund/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/khmer/trimlowabund/blobs/sha256:2d73c548fd2a7deb480f338ed406b81d5539a580aef41d2f9b51f4a7635cf70d |
| Size | 2.6 KB |
| Checksum | sha256:2d73c548fd2a7deb480f338ed406b81d5539a580aef41d2f9b51f4a7635cf70d |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:26:50 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:18:46 (UTC) | 4 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:12:47 (UTC) | 3 | 2.6 KB |