nf-core/kma/index @ 0.0.0-0c7146d
Summary
This module wraps the index module of the KMA alignment tool.
Get started
Add the following snippet to your workflow script to include this module.
include { KMA_INDEX } from 'nf-core/kma/index'
License
MIT License
Process
Name
|
KMA_INDEX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing reference information e.g. |
|---|---|
fasta
file
|
(Multi-)FASTA file of your database sequences. *.{fa,fasta}
|
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
kmaindex
directory
|
Directory of KMA index files *.{comp.b,length.b,name,seq.b}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| kma | Rapid and precise alignment of raw reads against redundant databases with KMA | https://bitbucket.org/genomicepidemiology/kma/src/master/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:12:53 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fkma%2Findex/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/kma/index/blobs/sha256:7081f64ff87c454580607b230aa5a3d0361b18b5a18f0a77ebe0e4fe2b39b3b4 |
| Size | 2.5 KB |
| Checksum | sha256:7081f64ff87c454580607b230aa5a3d0361b18b5a18f0a77ebe0e4fe2b39b3b4 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:26:54 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:12:53 (UTC) | 3 | 2.5 KB |