nf-core/kmcp/profile @ 0.0.0-6c4ed3a
Summary
Generate taxonomic profile from search results
Get started
Add the following snippet to your workflow script to include this module.
include { KMCP_PROFILE } from 'nf-core/kmcp/profile'
License
MIT License
Process
Name
|
KMCP_PROFILE |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
search_results
file
|
Gzipped file output from kmcp search module *.gz
|
db
directory
|
Database directory containing taxdump files and taxid file |
|---|
level
string
|
Taxonomic rank to generate profile at (e.g. "species", "strain", "assembly") |
|---|
Output
2 channels
#1
profile
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.profile
file
|
Tab-delimited format file with 17 columns. *.profile
|
#2
versions_kmcp
tuple
${task.process}
string
|
The name of the process |
|---|---|
kmcp
string
|
The name of the tool |
kmcp version 2>&1 | sed 's/^.*kmcp v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| kmcp | Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping | https://github.com/shenwei356/kmcp |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:27:02 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fkmcp%2Fprofile/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/kmcp/profile/blobs/sha256:289f7fb556429511d01f3cfac250168f55ebf1ef57b7ef65c63c1062345e9167 |
| Size | 3.5 KB |
| Checksum | sha256:289f7fb556429511d01f3cfac250168f55ebf1ef57b7ef65c63c1062345e9167 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:27:02 (UTC) | 3 | 3.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:18:54 (UTC) | 1 | 2.7 KB | |
| 0.0.0-5d5b444 | 21 Apr 2026 15:01:07 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:13:02 (UTC) | 3 | 2.7 KB |