nf-core/kmcp/search @ 0.0.0-3fc6d40
Summary
Search sequences against database
Get started
Add the following snippet to your workflow script to include this module.
include { KMCP_SEARCH } from 'nf-core/kmcp/search'
License
MIT License
Process
Name
|
KMCP_SEARCH |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
gzipped fasta or fastq files *.{fq.gz,fastq.gz,fa.gz}
|
db
directory
|
Database directory created by "kmcp index" *
|
|---|
Output
2 channels
#1
result
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.gz
file
|
Output file in tab-delimited format with 15 columns *.gz
|
#2
versions_kmcp
tuple
${task.process}
string
|
The name of the process |
|---|---|
kmcp
string
|
The name of the tool |
kmcp version 2>&1 | sed 's/^.*kmcp v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| kmcp | Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping | https://github.com/shenwei356/kmcp |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:18:56 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fkmcp%2Fsearch/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/kmcp/search/blobs/sha256:ad1fbff130d8252ed53250bf4af994d7d0b8c269a4f33edcde3422d742a57a20 |
| Size | 2.6 KB |
| Checksum | sha256:ad1fbff130d8252ed53250bf4af994d7d0b8c269a4f33edcde3422d742a57a20 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:27:03 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:18:56 (UTC) | 3 | 2.6 KB | |
| 0.0.0-5d5b444 | 21 Apr 2026 15:01:08 (UTC) | 2 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:13:04 (UTC) | 3 | 2.6 KB |