nf-core/malt/run @ 0.0.0-6c4ed3a
Summary
MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.
Get started
Add the following snippet to your workflow script to include this module.
include { MALT_RUN } from 'nf-core/malt/run'
License
MIT License
Process
Name
|
MALT_RUN |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fastqs
file
|
Input FASTQ files *.{fastq.gz,fq.gz}
|
index
directory
|
Index/database directory from malt-build */
|
|---|
Output
4 channels
#1
log
tuple
meta
file
|
MEGAN6 RMA6 file *.rma6
|
|---|---|
*.log
file
|
Log of verbose MALT stdout *-malt-run.log
|
#2
rma6
tuple
meta
file
|
MEGAN6 RMA6 file *.rma6
|
|---|---|
*.rma6
file
|
MEGAN6 RMA6 file *.rma6
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#4
alignments
tuple
meta
file
|
MEGAN6 RMA6 file *.rma6
|
|---|---|
*.{tab,text,sam,tab.gz,text.gz,sam.gz}
file
|
Alignment files in Tab, Text or MEGAN-compatible SAM format *.{tab,txt,sam}
|
| Tool | Description | Homepage |
|---|---|---|
| malt | A tool for mapping metagenomic data | https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/malt/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:29:19 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmalt%2Frun/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/malt/run/blobs/sha256:e54c714dfdbf5a401ec7c41973e049cea025d54c4a6f3a1392052e12591202cf |
| Size | 3.1 KB |
| Checksum | sha256:e54c714dfdbf5a401ec7c41973e049cea025d54c4a6f3a1392052e12591202cf |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:29:19 (UTC) | 3 | 3.1 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:20:51 (UTC) | 3 | 3.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:15:15 (UTC) | 3 | 3.1 KB |