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Nextflow Modules

Showing module(s) with keyword "palaeogenomics"

Module	Keywords	Description
nf-core/amps	malt MaltExtract HOPS amps alignment metagenomics ancient DNA aDNA palaeogenomics archaeogenomics microbiome authentication damage edit distance post Post-processing visualisation	Post-processing script of the MaltExtract component of the HOPS package
nf-core/damageprofiler	damage deamination miscoding lesions C to T ancient DNA aDNA palaeogenomics archaeogenomics palaeogenetics archaeogenetics	A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
nf-core/malt/build	malt alignment metagenomics ancient DNA aDNA palaeogenomics archaeogenomics microbiome database	MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.
nf-core/maltextract	malt MaltExtract HOPS alignment metagenomics ancient DNA aDNA palaeogenomics archaeogenomics microbiome authentication damage edit distance	Tool for evaluation of MALT results for true positives of ancient metagenomic taxonomic screening
nf-core/malt/run	malt alignment metagenomics ancient DNA aDNA palaeogenomics archaeogenomics microbiome	MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.
nf-core/mapad/map	mapad ancient dna adna damage deamination miscoding lesions c to t palaeogenomics archaeogenomics palaeogenetics archaeogenetics short-read align aligner alignment map mapper mapping reference fasta fastq bam cram	Map short-reads to an indexed reference genome
nf-core/pydamage/analyze	ancient DNA aDNA de novo assembly filtering damage deamination miscoding lesions C to T palaeogenomics archaeogenomics palaeogenetics archaeogenetics	Damage parameter estimation for ancient DNA
nf-core/pydamage/filter	ancient DNA aDNA de novo assembly filtering damage deamination miscoding lesions C to T palaeogenomics archaeogenomics palaeogenetics archaeogenetics	Damage parameter estimation for ancient DNA