nf-core/mlst @ 0.0.0-3fc6d40
Summary
Run Torsten Seemann's classic MLST on a genome assembly
Get started
Add the following snippet to your workflow script to include this module.
include { MLST } from 'nf-core/mlst'
License
MIT License
Process
Name
|
MLST |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Assembly fasta file *.{fasta,fa,fna}
|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
MLST calls in tsv format *.{tsv}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| mlst | Scan contig files against PubMLST typing schemes | https://github.com/tseemann/mlst |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:22:04 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmlst/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/mlst/blobs/sha256:596a8f4cc2d9b23d8a1359807ec4c6f2523c91e12236e91348c9aeebfe23b65d |
| Size | 2.1 KB |
| Checksum | sha256:596a8f4cc2d9b23d8a1359807ec4c6f2523c91e12236e91348c9aeebfe23b65d |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:30:57 (UTC) | 3 | 2.1 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:22:04 (UTC) | 4 | 2.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:18:30 (UTC) | 4 | 2.1 KB |