Nextflow Modules
Showing module(s) with keyword "mlst"
| Module | Keywords | Description |
|---|---|---|
| nf-core/mlst | mlst typing bacteria assembly | Run Torsten Seemann's classic MLST on a genome assembly |
| nf-core/srst2/srst2 | mlst typing illumina | Short Read Sequence Typing for Bacterial Pathogens is a program designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes. |
| nf-core/staramr/search | amr plasmid mlst genomics | Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases. |