nf-core/pairtools/dedup @ 0.0.0-0c7146d
Summary
Find and remove PCR/optical duplicates
Get started
Add the following snippet to your workflow script to include this module.
include { PAIRTOOLS_DEDUP } from 'nf-core/pairtools/dedup'
License
MIT License
Process
Name
|
PAIRTOOLS_DEDUP |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input
file
|
pair file |
Output
3 channels
#1
stat
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.pairs.stat
file
|
stats of the pairs *.{pairs.stat}
|
#2
pairs
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.pairs.gz
file
|
Duplicates removed pairs *.{pairs.gz}
|
#3
versions_pairtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
pairtools
string
|
The name of the tool |
pairtools --version | sed 's/.*pairtools.*version //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| pairtools | CLI tools to process mapped Hi-C data | http://pairtools.readthedocs.io/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:22:43 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpairtools%2Fdedup/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/pairtools/dedup/blobs/sha256:15c24384bfa55b1d9a2772cb1e70a599da8ce1555f171de148ef8a2c9b0d102c |
| Size | 2.3 KB |
| Checksum | sha256:15c24384bfa55b1d9a2772cb1e70a599da8ce1555f171de148ef8a2c9b0d102c |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:34:48 (UTC) | 3 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:24:56 (UTC) | 4 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:22:43 (UTC) | 1 | 2.3 KB |