Nextflow Registry | nf-core/panacus/histgrowth@0.0.0-3fc6d40

nf-core/panacus/histgrowth @ 0.0.0-3fc6d40

Calculates a coverage histogram from a GFA file and constructs a growth table from this as either a TSV or HTML file

statistics pangenome graph gfa genomics

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @heringerp

Maintainers: @heringerp @subwaystation

Calculates a coverage histogram from a GFA file and constructs a growth table from this as either a TSV or HTML file

Add the following snippet to your workflow script to include this module.

include { PANACUS_HISTGROWTH } from 'nf-core/panacus/histgrowth'

MIT License

Process

`Name`	`PANACUS_HISTGROWTH`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`gfa` file	GFA file containing a graph without overlapping nodes `*.gfa`

`bed_subset` file	Optional 1-column TXT-list of paths or 3-/12-column BED file of path coordinates for getting counts by subsetting the graph `*.{txt, bed}`

`bed_exclude` file	Optional 1-column TXT-list of paths or 3-/12-column BED file of path coordinates for excluding bp/nodes/edges that intersect these paths `*.{txt, bed}`

`tsv_groupby` file	Optional 2-column TSV file containing path to group mapping according to which counts from different paths get merged `*.{txt, bed}`

Output 2 channels

#1 tsv tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.{tsv, html}` file	TSV file containing the statistics. Alternatively, the HTML file can be the output `*.tsv`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
panacus	panacus is a tool for computing counting statistics for GFA files	https://github.com/marschall-lab/panacus

Version	0.0.0-3fc6d40
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	22 Apr 2026 15:25:09 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fpanacus%2Fhistgrowth/0.0.0-3fc6d40/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/panacus/histgrowth/blobs/sha256:a517874f206d7e2276bc336c2dd1a0aeb6f2ce03dc0049ad42bec1100a996944
Size	2.5 KB
Checksum	sha256:a517874f206d7e2276bc336c2dd1a0aeb6f2ce03dc0049ad42bec1100a996944
Downloads	4

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:34:59 (UTC)	3	2.5 KB
0.0.0-3fc6d40	22 Apr 2026 15:25:09 (UTC)	4	2.5 KB
0.0.0-0c7146d	08 Apr 2026 19:23:46 (UTC)	2	2.5 KB