nf-core/picard/meanqualitybycycle @ 0.0.0-0c7146d
Summary
Collect metrics about the mean quality by cycle of a paired-end library.
Get started
Add the following snippet to your workflow script to include this module.
include { PICARD_MEANQUALITYBYCYCLE } from 'nf-core/picard/meanqualitybycycle'
License
MIT License
Process
Name
|
PICARD_MEANQUALITYBYCYCLE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM/CRAM/SAM file *.{bam,cram,sam}
|
Output
3 channels
#1
pdf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.pdf
file
|
Chart in PDF format *.pdf
|
#2
metrics
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Values used by Picard to generate chart. *.txt
|
#3
versions_picard
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
picard
string
|
The tool name |
picard MeanQualityByCycle --version 2>&1 | sed -n 's/.*Version://p'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| picard | Java tools for working with NGS data in the BAM format | https://broadinstitute.github.io/picard/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:25:53 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpicard%2Fmeanqualitybycycle/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/picard/meanqualitybycycle/blobs/sha256:a900cfcd1876a1ec9d16b2ed02d2df2e1ff099840dbc690b176851110a95617f |
| Size | 2.7 KB |
| Checksum | sha256:a900cfcd1876a1ec9d16b2ed02d2df2e1ff099840dbc690b176851110a95617f |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:36:11 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:25:53 (UTC) | 3 | 2.7 KB |