nf-core/quantmsutils/mzmlstatistics @ 0.0.0-0c7146d
Summary
Generate statistics from mzML files using quantms-utils
Get started
Add the following snippet to your workflow script to include this module.
include { QUANTMSUTILS_MZMLSTATISTICS } from 'nf-core/quantmsutils/mzmlstatistics'
License
MIT License
Process
Name
|
QUANTMSUTILS_MZMLSTATISTICS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', name:'test' ] |
|---|---|
ms_file
file
|
Input mzML file *.{mzML,mzml}
|
Output
5 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', name:'test' ] |
|---|---|
*.log
file
|
Log file *.log
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#3
ms_statistics
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', name:'test' ] |
|---|---|
*_ms_info.parquet
file
|
MS statistics in parquet format *_ms_info.parquet
|
#4
ms2_statistics
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', name:'test' ] |
|---|---|
*_ms2_info.parquet
file
|
MS2 statistics in parquet format (optional) *_ms2_info.parquet
|
#5
feature_statistics
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', name:'test' ] |
|---|---|
*_feature_info.parquet
file
|
Feature statistics in parquet format (optional) *_feature_info.parquet
|
| Tool | Description | Homepage |
|---|---|---|
| quantms-utils | A Python package for quantitative mass spectrometry data analysis | https://github.com/bigbio/quantms-utils |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:29:55 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fquantmsutils%2Fmzmlstatistics/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/quantmsutils/mzmlstatistics/blobs/sha256:e8c89884636547ea7d82f438c2d34fd4704bdd9790e48071464ae37206935412 |
| Size | 2.7 KB |
| Checksum | sha256:e8c89884636547ea7d82f438c2d34fd4704bdd9790e48071464ae37206935412 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:39:23 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:28:11 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:29:55 (UTC) | 3 | 2.7 KB |