nf-core/seqkit/head @ 0.0.0-3fc6d40
Summary
Subset FASTA/FASTQ files to some number of sequences
Get started
Add the following snippet to your workflow script to include this module.
include { SEQKIT_HEAD } from 'nf-core/seqkit/head'
License
MIT License
Process
Name
|
SEQKIT_HEAD |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fastqs
file
|
FASTA or FASTQ files to subset *.{fa,fasta,fq,fastq}
|
seq_count
integer
|
The number of sequences to include in the subset |
Output
2 channels
#1
subset
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}_subset_*
file
|
Subset FASTA/FASTQ files *.{fa,fasta,fq,fastq}
|
#2
versions_seqkit
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqkit
string
|
The name of the tool |
seqkit version | sed 's/^.*v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| seqkit | A cross-platform and ultrafast toolkit for FASTA/Q file manipulation | https://bioinf.shenwei.me/seqkit/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:30:22 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fseqkit%2Fhead/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/seqkit/head/blobs/sha256:fd584c2de68075d92115480d0c799183c9bf5406abc8acc05bfeb5d679d04d68 |
| Size | 2.4 KB |
| Checksum | sha256:fd584c2de68075d92115480d0c799183c9bf5406abc8acc05bfeb5d679d04d68 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:44:27 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:30:22 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:36:35 (UTC) | 3 | 2.4 KB |