nf-core/seqkit/sample @ 0.0.0-56a9b6d
Summary
Sample sequences from FASTA/FASTQ files by number or proportion
Get started
Add the following snippet to your workflow script to include this module.
include { SEQKIT_SAMPLE } from 'nf-core/seqkit/sample'
License
MIT License
Process
Name
|
SEQKIT_SAMPLE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fastx
file
|
Input FASTA or FASTQ file *.{fsa,fas,fa,fasta,fastq,fq}{,.gz}
|
Output
2 channels
#1
fastx
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.${extension}
file
|
Sampled output FASTA or FASTQ file *.{fasta,fasta.gz,fastq,fastq.gz}
|
#2
versions_seqkit
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqkit
string
|
The name of the tool |
seqkit version | sed 's/^.*v//'
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| seqkit | A cross-platform and ultrafast toolkit for FASTA/Q file manipulation | https://bioinf.shenwei.me/seqkit/ |
| Version | 0.0.0-56a9b6d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 10 Apr 2026 15:00:46 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fseqkit%2Fsample/0.0.0-56a9b6d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/seqkit/sample/blobs/sha256:a853342ae124f5f2fe5ccf9241ca7ea3d2c03823009dd3dffe8485979093195a |
| Size | 2.7 KB |
| Checksum | sha256:a853342ae124f5f2fe5ccf9241ca7ea3d2c03823009dd3dffe8485979093195a |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:44:32 (UTC) | 4 | 2.7 KB | |
| 0.0.0-c24122a | 11 Apr 2026 15:00:24 (UTC) | 3 | 2.7 KB | |
| 0.0.0-56a9b6d | 10 Apr 2026 15:00:46 (UTC) | 4 | 2.7 KB |