Nextflow Modules
Showing module(s) with keyword "sample"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| cellgeni/rename10xsample | Process | 10x single-cell FASTQ rename Cell Ranger sample | Collects per-run Cell Ranger-style FASTQs for a sample and renames them to a consistent sample-level naming scheme, ready for downstream alignment. |
| nf-core/picard/positionbaseddownsamplesam | Process | sample bam sam cram | Samples a SAM/BAM/CRAM file using flowcell position information for the best approximation of having sequenced fewer reads |
| nf-core/qcat | Process | demultiplex nanopore sample | Demultiplexer for Nanopore samples |
| nf-core/seqkit/sample | Process | genomics fasta fastq sample subset seqkit | Sample sequences from FASTA/FASTQ files by number or proportion |
| nf-core/seqtk/sample | Process | sample fastx reads | Subsample reads from FASTQ files |
| nf-core/summarizedexperiment/summarizedexperiment | Process | gene transcript sample matrix assay | SummarizedExperiment container |