nf-core/sylph/sketchgenomes @ 0.0.0-3fc6d40
Summary
Sylph profile command for taxonoming profiling of genomes
Get started
Add the following snippet to your workflow script to include this module.
include { SYLPH_SKETCHGENOMES } from 'nf-core/sylph/sketchgenomes'
License
MIT License
Process
Name
|
SYLPH_SKETCHGENOMES |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
List of reference genome FASTA file to convert to sylph database file *.{fasta,fas,fa,fna}
|
Output
2 channels
#1
syldb
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*.syldb
file
|
Sylph database sketch file for profiling *.syldb
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| sylph | Sylph quickly enables querying of genomes against even low-coverage shotgun metagenomes to find nearest neighbour ANI. | https://github.com/bluenote-1577/sylph |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:34:03 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsylph%2Fsketchgenomes/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/sylph/sketchgenomes/blobs/sha256:28ecc23005d4bab7a5c202ae64cacb52679dcce999ed6a2356982bff6278b772 |
| Size | 2.4 KB |
| Checksum | sha256:28ecc23005d4bab7a5c202ae64cacb52679dcce999ed6a2356982bff6278b772 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:49:04 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:34:03 (UTC) | 4 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:41:54 (UTC) | 4 | 2.3 KB |