nf-core/ucsc/bigwigaverageoverbed @ 0.0.0-0c7146d
Summary
compute average score of bigwig over bed file
Get started
Add the following snippet to your workflow script to include this module.
include { UCSC_BIGWIGAVERAGEOVERBED } from 'nf-core/ucsc/bigwigaverageoverbed'
License
MIT License
Process
Name
|
UCSC_BIGWIGAVERAGEOVERBED |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
bed file *.{bed}
|
bigwig
file
|
bigwig file *.{bigwig,bw}
|
|---|
Output
2 channels
#1
tab
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tab
file
|
tab file *.{tab}
|
#2
versions_ucsc
tuple
${task.process}
string
|
The name of the process |
|---|---|
ucsc
string
|
The name of the tool |
482
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ucsc | Compute average score of big wig over each bed, which may have introns. | http://hgdownload.cse.ucsc.edu/admin/exe/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:44:38 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fucsc%2Fbigwigaverageoverbed/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ucsc/bigwigaverageoverbed/blobs/sha256:95863403b4dc59a6707aa3aa9610e5c8825b2d869c6b7432cf45535d868a472d |
| Size | 2.3 KB |
| Checksum | sha256:95863403b4dc59a6707aa3aa9610e5c8825b2d869c6b7432cf45535d868a472d |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:50:28 (UTC) | 3 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:35:05 (UTC) | 4 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:44:38 (UTC) | 3 | 2.3 KB |