nf-core/umitools/prepareforrsem @ 0.0.0-6c4ed3a
Summary
Make the output from umi_tools dedup or group compatible with RSEM
Get started
Add the following snippet to your workflow script to include this module.
include { UMITOOLS_PREPAREFORRSEM } from 'nf-core/umitools/prepareforrsem'
License
MIT License
Process
Name
|
UMITOOLS_PREPAREFORRSEM |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM file containing reads to be deduplicated via UMIs. *.{bam}
|
bai
file
|
BAM index files corresponding to the input BAM file. *.{bai}
|
Output
3 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bam
file
|
Prepared BAM file. *.{bam}
|
#2
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
File with logging information *.{log}
|
#3
versions_umitools
tuple
${task.process}
string
|
The name of the process |
|---|---|
umitools
string
|
The name of the tool |
umi_tools --version | sed 's/UMI-tools version: //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| umi_tools | UMI-tools contains tools for dealing with Unique Molecular Identifiers (UMIs)/Random Molecular Tags (RMTs) and single cell RNA-Seq cell barcodes | n/a |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:50:42 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fumitools%2Fprepareforrsem/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/umitools/prepareforrsem/blobs/sha256:f8aa7a896fd27ae8add1baf26aff0ba4718fef69c61cf906beab192ef5bc5e10 |
| Size | 2.6 KB |
| Checksum | sha256:f8aa7a896fd27ae8add1baf26aff0ba4718fef69c61cf906beab192ef5bc5e10 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:50:42 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:45:00 (UTC) | 3 | 2.6 KB |